After creating an instance of a VM using googleComputeEngineR
How do I get the ncdf4 package installed on a VM Rstudio instance?
This is the code generated from using Tools>Install packages...>
install.packages("/tmp/RtmprmX1wu/downloaded_packages/ncdf4_1.16.tar.gz", repos = NULL, type = "source")
Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
* installing source package ‘ncdf4’ ...
** package ‘ncdf4’ successfully unpacked and MD5 sums checked
configure.ac: starting
checking for nc-config... no
Error, nc-config not found or not executable. This is a script that comes with the
netcdf library, version 4.1-beta2 or later, and must be present for configuration
to succeed.
If you installed the netcdf library (and nc-config) in a standard location, nc-config
should be found automatically. Otherwise, you can specify the full path and name of
the nc-config script by passing the --with-nc-config=/full/path/nc-config argument
flag to the configure script. For example:
./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config
Special note for R users:
To pass the configure flag to R, use something like this:
R CMD INSTALL --configure-args="--with-nc-config=/home/joe/bin/nc-config" ncdf4
where you should replace /home/joe/bin etc. with the location where you have
installed the nc-config script that came with the netcdf 4 distribution.
ERROR: configuration failed for package ‘ncdf4’
* removing ‘/usr/local/lib/R/site-library/ncdf4’
Warning in install.packages :
installation of package
‘/tmp/RtmprmX1wu/downloaded_packages/ncdf4_1.16.tar.gz’ had non-zero exit status
I think I need to change "/usr/local/lib/R/site-library"
But to what?
Or is it that I need to do something with config?
(sorry can't load a library to get the result nicely formatted either)
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